Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs9463180 | chr6:46082214 | C/T | 5.54E-5 | 490 | 15.68 | 16.57 | 17.77 | KM Plot |
| THCA | rs9463181 | chr6:46086577 | C/T | 5.84E-5 | 487 | 15.7 | 16.37 | 17.77 | KM Plot |
| THCA | rs9463182 | chr6:46089297 | G/A | 5.61E-5 | 489 | 15.68 | 16.47 | 17.77 | KM Plot |
| THCA | rs9468379 | chr6:28431184 | C/T | 2.5E-11 | 479 | 15.7 | 17.1 | 20.18 | KM Plot |
| THCA | rs9468380 | chr6:28435684 | G/T | 2.5E-11 | 479 | 15.7 | 17.1 | 20.18 | KM Plot |
| THCA | rs9472687 | chr6:46080181 | G/A | 5.54E-5 | 490 | 15.68 | 16.57 | 17.77 | KM Plot |
| THCA | rs9472695 | chr6:46106441 | T/G | 7.69E-5 | 490 | 15.7 | 16.47 | 17.77 | KM Plot |
| THCA | rs9472702 | chr6:46117304 | C/T | 6.04E-5 | 487 | 15.68 | 16.37 | 27.37 | KM Plot |
| THCA | rs9472706 | chr6:46119325 | C/T | 6.04E-5 | 487 | 15.68 | 16.37 | 27.37 | KM Plot |
| THCA | rs9472710 | chr6:46131466 | A/C | 5.34E-5 | 489 | 15.77 | 16.37 | 27.37 | KM Plot |
| THCA | rs9472711 | chr6:46133785 | C/T | 5.34E-5 | 489 | 15.77 | 16.37 | 27.37 | KM Plot |
| THCA | rs9479466 | chr6:153289288 | G/T | 0 | 488 | 15.17 | 18.32 | 6.92 | KM Plot |
| THCA | rs9479470 | chr6:153293793 | G/C | 0 | 489 | 15.17 | 18.32 | 6.92 | KM Plot |
| THCA | rs9479476 | chr6:153301542 | T/C | 0 | 489 | 15.17 | 18.32 | 6.92 | KM Plot |
| THCA | rs9481862 | chr6:119117891 | G/C | 0.000263 | 483 | 16.27 | 14.23 | 21.77 | KM Plot |